PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA05g08330
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 775aa    MW: 86721.4 Da    PI: 8.3199
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA05g08330genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00063683706223
                 EET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   2 kCp..dCgksFsrksnLkrHirtH 23 
                 +Cp   C k F+++ + ++H+r+H
  CA05g08330 683 RCPieGCEKKFTSHKYAQVHQRVH 706
                 69999*****************99 PP

2zf-C2H2120.00064742768123
                 EEET..TTTEEESSHHHHHHHHHH..T CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt..H 23 
                 ykC+   Cg +F+  s++ rH r+  H
  CA05g08330 742 YKCKveGCGLTFRFVSDFSRHRRKtgH 768
                 99*********************9777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035527659681IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.39E-6670719No hitNo description
PROSITE profilePS5015711.468682711IPR007087Zinc finger, C2H2
SMARTSM003550.037682706IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.8E-5682710IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280684706IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.0E-10711736IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0023712736IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.635712741IPR007087Zinc finger, C2H2
PROSITE patternPS000280714736IPR007087Zinc finger, C2H2
SuperFamilySSF576671.13E-10722764No hitNo description
Gene3DG3DSA:3.30.160.605.2E-11737765IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.2742768IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.307742768IPR007087Zinc finger, C2H2
PROSITE patternPS000280744768IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045814Biological Processnegative regulation of gene expression, epigenetic
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0003676Molecular Functionnucleic acid binding
GO:0032452Molecular Functionhistone demethylase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 775 aa     Download sequence    Send to blast
MSGRYCKFIR ITRLRNTELP LHAVDRIGRN GVHSLNQDEV SLYAQPSESA VSPHEGQTSQ  60
SHHLSHTDNA VLTSKVDFEK ECDVSRGLVR PQIFCLEHAI QTEELLRTKG GANVLVICHS  120
DFQKIRGHAA IVAEEIDTTY KYNEIPLANA SQGHLSLIDL AMRDEEQGKC AEDWTLKLNI  180
NLRHCVKVQR NYPLKKLKHA LILGGLFSDT TRSSDSLSPL KWQSRKVRSK RKLNNSTEST  240
PFANVQIEKV VDSGSTVDMQ NTRNRNIRIQ YSRKKYKRKA CSFVDPFNDS KEVLLADAKT  300
LGSTLRRDEN AGTTSVAGRF VAASDEKPLL RHEHEMLLLN RDENGNLLAP QEADLLVTTS  360
LVVELDEARA EICTTEKFSL ENKTCITNSS TCHTENKTTA AETSGETEIT HVHVVQSTAY  420
NEKLEENRDM TESVIRGKSA QLMEADFERD YHSGDDKAIM TRSLVPVNSS GCCTDGPSRS  480
CDAKIEDQVS EQFGSGSEAS DSDTSHKSVE QEIQIDNSVK DIAVSDHVTP IEEASASAGS  540
LKMTTKTSRI KHSQSGNGIS EQDKKESNED TSAIVLRLTG KSGGKRSELD LLTNDGHSVG  600
GFAKSPCEGL RPRARKNVPG SRVDTKELLE KKSMGNKVRR SLHSSISPKD KKEQRKGAHR  660
CNLEGCWMSF QTKVELQLHK HNRCPIEGCE KKFTSHKYAQ VHQRVHENDR PLKCPWKGCT  720
MTFKWAWART EHLRVHTGER PYKCKVEGCG LTFRFVSDFS RHRRKTGHYV DAVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C7e-116617538104PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016573064.10.0PREDICTED: LOW QUALITY PROTEIN: probable lysine-specific demethylase ELF6
SwissprotQ6BDA07e-56ELF6_ARATH; Probable lysine-specific demethylase ELF6
TrEMBLA0A0V0IZG60.0A0A0V0IZG6_SOLCH; Putative lysine-specific demethylase ELF6-like
STRINGSolyc04g028560.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48351721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.14e-57C2H2 family protein